PH01002211G0290's details annotation
1.Annotation
ICBR annotation: peptidase, M24 family protein, putative, expressed
Blast result AT3G05350 : 6.00E-178
Blast annotation: Metallopeptidase M24 family protein
2.Location
Scaffold: PH01002211
Strand: -
| Region | Start | End |
| gene | 225534 | 232605 |
| mRNA | 225534 | 232605 |
| exon | 225534 | 226086 |
| exon | 226467 | 226547 |
| exon | 227209 | 227363 |
| exon | 227487 | 227595 |
| exon | 227736 | 227926 |
| exon | 229023 | 229174 |
| exon | 229508 | 229783 |
| exon | 229905 | 229985 |
| exon | 231163 | 231335 |
| exon | 231421 | 231525 |
| exon | 231625 | 231633 |
| exon | 231918 | 232605 |
| CDS | 226024 | 226086 |
| CDS | 226467 | 226547 |
| CDS | 227209 | 227363 |
| CDS | 227487 | 227595 |
| CDS | 227736 | 227926 |
| CDS | 229023 | 229174 |
| CDS | 229508 | 229783 |
| CDS | 229905 | 229985 |
| CDS | 231163 | 231335 |
| CDS | 231421 | 231525 |
| CDS | 231625 | 231633 |
| CDS | 231918 | 232199 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16189.4 | Creatinase_N_2 | 41 | 94 |
| PF16189.4 | Creatinase_N_2 | 107 | 299 |
| PF00557.23 | Peptidase_M24 | 302 | 512 |
| PF16188.4 | Peptidase_M24_C | 510 | 558 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009987 | cellular process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.