PH01002213G0250's details annotation
1.Annotation
ICBR annotation: OsFBO9 - F-box and other domain containing protein, expressed
Blast result AT5G57360 : 0.00E+00
Blast annotation: Galactose oxidase/kelch repeat superfamily protein
2.Location
Scaffold: PH01002213
Strand: -
| Region | Start | End |
| gene | 161001 | 165664 |
| mRNA | 161001 | 165664 |
| exon | 161001 | 162932 |
| exon | 164002 | 165664 |
| CDS | 161324 | 162932 |
| CDS | 164002 | 164543 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000520 | ER_membrane_protein_complex GT96 GlycosylTransferases TKL-Pl-4 (from iTAK) |
| coexpression network | CFinderM001495 | integral to Golgi membrane, intra-Golgi vesicle-mediated transport, cysteine metabolic process, STE_STE11 (from iTAK) Sulfur_relay_system Thiamine_metabolism cysteine desulfurase activity, |
| coexpression network | CFinderM001496 | Sulfur_relay_system Thiamine_metabolism COPI vesicle coat, clathrin adaptor complex, cysteine desulfurase activity, cysteine metabolic process, retrograde vesicle-mediated transport, Golgi to ER, |
| coexpression network | CFinderM001497 | COPII vesicle coat, ER to Golgi vesicle-mediated transport, Protein_processing_in_endoplasmic_reticulum signal transducer activity, ubiquitin thiolesterase activity, structural molecule activity, protein binding, transferase activity, transferring glycosyl groups, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 314 | 350 |
| PF13418.5 | Kelch_4 | 400 | 450 |
| PF13415.5 | Kelch_3 | 465 | 511 |
| PF13415.5 | Kelch_3 | 516 | 565 |
| PF07646.14 | Kelch_2 | 624 | 671 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004871 | signal transducer activity |
| GO:0005515 | protein binding |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.