PH01002213G0380's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G57345 : 6.90E-19
Blast annotation: -
2.Location
Scaffold: PH01002213
Strand: -
| Region | Start | End |
| gene | 245102 | 249187 |
| mRNA | 245102 | 249187 |
| exon | 245102 | 246430 |
| exon | 248581 | 249187 |
| CDS | 246208 | 246430 |
| CDS | 248581 | 248891 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000522 | GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) metabolic process, potassium_ion_transmembrane_transport membrane, Drug_metabolism_-_other_enzymes Pentose_and_glucuronate_interconversions Drug_metabolism_-_cytochrome_P450 Retinol_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 Porphyrin_and_chlorophyll_metabolism Steroid_hormone_biosynthesis Ascorbate_and_aldarate_metabolism |
| coexpression network | CFinderM001007 | RLK-Pelle_LRR-Xa (from iTAK) Terpenoid_backbone_biosynthesis isopentenyl-diphosphate delta-isomerase activity, coproporphyrinogen oxidase activity, porphyrin-containing compound biosynthetic process, transferase activity, transferring phosphorus-containing groups, isoprenoid biosynthetic process, |
| coexpression network | CFinderM001260 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
| coexpression network | CFinderM001289 | RLK-Pelle_LRR-Xa (from iTAK) alternative_oxidase_activity Metabolism_of_xenobiotics_by_cytochrome_P450 Ascorbate_and_aldarate_metabolism Retinol_metabolism Porphyrin_and_chlorophyll_metabolism Pentose_and_glucuronate_interconversions Drug_metabolism_-_cytochrome_P450 Steroid_hormone_biosynthesis Drug_metabolism_-_other_enzymes |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07466.10 | DUF1517 | 77 | 172 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.