PH01002218G0080's details annotation
1.Annotation
ICBR annotation: MSP domain containing protein, expressed
Blast result AT2G45140 : 3.30E-73
Blast annotation: plant VAP homolog 12
2.Location
Scaffold: PH01002218
Strand: +
| Region | Start | End |
| gene | 43856 | 49817 |
| mRNA | 43856 | 49817 |
| exon | 43856 | 44309 |
| exon | 44437 | 44507 |
| exon | 45773 | 45854 |
| exon | 45960 | 46075 |
| exon | 46255 | 46419 |
| exon | 46503 | 46544 |
| exon | 46824 | 46901 |
| exon | 48662 | 49817 |
| CDS | 44240 | 44309 |
| CDS | 44437 | 44507 |
| CDS | 45773 | 45854 |
| CDS | 45960 | 46075 |
| CDS | 46255 | 46419 |
| CDS | 46503 | 46544 |
| CDS | 46824 | 46901 |
| CDS | 48662 | 48772 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001408 | outer membrane, peptide-methionine-(S)-S-oxide reductase activity, |
| coexpression network | CFinderM001549 | SNARE_interactions_in_vesicular_transport vesicle-mediated transport, intracellular protein transport, SNAP receptor activity, structural molecule activity, |
| coexpression network | CFinderM001629 | mRNA_surveillance_pathway peptide-methionine-(S)-S-oxide reductase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00635.25 | Motile_Sperm | 13 | 116 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.