PH01002223G0190's details annotation
1.Annotation
ICBR annotation: Dicer, putative, expressed
Blast result AT3G03300 : 2.00E-66
Blast annotation: dicer-like 2
2.Location
Scaffold: PH01002223
Strand: -
| Region | Start | End |
| gene | 106413 | 108336 |
| mRNA | 106413 | 108336 |
| exon | 106413 | 106636 |
| exon | 106753 | 106814 |
| exon | 106896 | 106983 |
| exon | 107302 | 107728 |
| exon | 107810 | 108336 |
| CDS | 106457 | 106636 |
| CDS | 106753 | 106814 |
| CDS | 106896 | 106983 |
| CDS | 107302 | 107728 |
| CDS | 107810 | 107922 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00270.28 | DEAD | 39 | 205 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
| GO:0008026 | ATP-dependent helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.