Annotation of co-expression genes

PH01002225G0300's details annotation

1.Annotation

ICBR annotation: aminotransferase domain containing protein, putative, expressed

Blast result AT5G57850 : 4.00E-115
Blast annotation: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein

2.Location

Scaffold: PH01002225
Strand: -

RegionStartEnd
gene227882231867
mRNA227882231867
exon227882228977
exon229118229791
exon230025230203
exon231353231436
exon231683231867
CDS228883228977
CDS229118229791
CDS230025230203
CDS231353231436
CDS231683231790

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01063.18Aminotran_4126352

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
304 Valine, leucine and isoleucine biosynthesisbranched-chain amino acid aminotransferase [EC:2.6.1.4]K00826
Pantothenate and CoA biosynthesisbranched-chain amino acid aminotransferase [EC:2.6.1.4]ko00770K00826
282 Valine, leucine and isoleucine degradationbranched-chain amino acid aminotransferase [EC:2.6.1.4]K00826

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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