PH01002226G0100's details annotation
1.Annotation
ICBR annotation: DIRP family protein, putative, expressed
Blast result AT5G27610 : 3.10E-83
Blast annotation: DIRP ;Myb-like DNA-binding domain
2.Location
Scaffold: PH01002226
Strand: +
| Region | Start | End |
| gene | 50695 | 60538 |
| mRNA | 50695 | 60538 |
| exon | 50695 | 50864 |
| exon | 53718 | 53863 |
| exon | 54013 | 54108 |
| exon | 54208 | 54270 |
| exon | 54572 | 54649 |
| exon | 55163 | 55187 |
| exon | 55499 | 55927 |
| exon | 56818 | 56895 |
| exon | 57005 | 57153 |
| exon | 57641 | 57916 |
| exon | 57996 | 58177 |
| exon | 58269 | 58551 |
| exon | 59236 | 59445 |
| exon | 59605 | 59820 |
| exon | 59911 | 60069 |
| exon | 60161 | 60538 |
| CDS | 50810 | 50864 |
| CDS | 53718 | 53863 |
| CDS | 54013 | 54108 |
| CDS | 54208 | 54270 |
| CDS | 54572 | 54649 |
| CDS | 55163 | 55187 |
| CDS | 55499 | 55927 |
| CDS | 56818 | 56895 |
| CDS | 57005 | 57153 |
| CDS | 57641 | 57916 |
| CDS | 57996 | 58177 |
| CDS | 58269 | 58551 |
| CDS | 59236 | 59445 |
| CDS | 59605 | 59820 |
| CDS | 59911 | 60069 |
| CDS | 60161 | 60346 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 77 | 112 |
| PF06584.12 | DIRP | 487 | 587 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.