PH01002227G0070's details annotation
1.Annotation
ICBR annotation: OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed
Blast result AT1G10200 : 1.40E-44
Blast annotation: GATA type zinc finger transcription factor family protein
2.Location
Scaffold: PH01002227
Strand: -
| Region | Start | End |
| gene | 31439 | 42134 |
| mRNA | 31439 | 42134 |
| exon | 31439 | 32126 |
| exon | 32312 | 32497 |
| exon | 32551 | 32672 |
| exon | 33856 | 37202 |
| exon | 37864 | 37953 |
| exon | 38085 | 38128 |
| exon | 38232 | 38328 |
| exon | 41051 | 42134 |
| CDS | 31621 | 32126 |
| CDS | 32312 | 32497 |
| CDS | 32551 | 32672 |
| CDS | 33856 | 37202 |
| CDS | 37864 | 37953 |
| CDS | 38085 | 38128 |
| CDS | 38232 | 38328 |
| CDS | 41051 | 41269 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00412.21 | LIM | 138 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.