Annotation of co-expression genes

PH01002228G0280's details annotation

1.Annotation

ICBR annotation: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed

Blast result AT5G04940 : 9.00E-161
Blast annotation: SU(VAR)3-9 homolog 1

2.Location

Scaffold: PH01002228
Strand: -

RegionStartEnd
gene183733187190
mRNA183733187190
exon183733187190
CDS183738185879

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000730histone_methylation
histone_lysine_methylation
Lysine_degradation
CMGC_DYRK-PRP4 (from iTAK)
Jumonji Transcription_Regulator(from iTAK)
SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
coexpression networkCFinderM001543SET Transcription_Regulator(from iTAK)
histone_lysine_methylation
histone-lysine N-methyltransferase activity,
Lysine_degradation
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity,
histone_methylation
(1->3)-beta-D-glucan biosynthetic process,
cellular protein modification process,
histone_binding
1,3-beta-D-glucan synthase complex,
nucleus,
1,3-beta-D-glucan synthase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SET

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02182.16SAD_SRA259406
PF05033.15Pre-SET435533
PF00856.27SET552681

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Lysine degradationeuchromatic histone-lysine N-methyltransferase [EC:2.1.1.43]ko00310K11420

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0005515protein binding
GO:0005634nucleus
GO:0008270zinc ion binding
GO:0016571histone methylation
GO:0018024histone-lysine N-methyltransferase activity
GO:0034968histone lysine methylation
GO:0042393histone binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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