PH01002230G0090's details annotation
1.Annotation
ICBR annotation: protein kinase family protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01002230
Strand: +
| Region | Start | End |
| gene | 66374 | 73645 |
| mRNA | 66374 | 73645 |
| exon | 66374 | 69496 |
| exon | 69957 | 70029 |
| exon | 70140 | 70250 |
| exon | 70540 | 70632 |
| exon | 71058 | 71150 |
| exon | 71309 | 71445 |
| exon | 71916 | 72069 |
| exon | 72151 | 72219 |
| exon | 72515 | 72622 |
| exon | 72848 | 72937 |
| exon | 73396 | 73645 |
| CDS | 69231 | 69496 |
| CDS | 69957 | 70029 |
| CDS | 70140 | 70250 |
| CDS | 70540 | 70632 |
| CDS | 71058 | 71150 |
| CDS | 71309 | 71445 |
| CDS | 71916 | 72069 |
| CDS | 72151 | 72219 |
| CDS | 72515 | 72622 |
| CDS | 72848 | 72937 |
| CDS | 73396 | 73506 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001176 | 6-phosphofructokinase complex, amino acid binding, 6-phosphofructokinase activity, glycolysis, |
| coexpression network | CFinderM001177 | MED6 Transcription_Regulator(from iTAK) mediator complex, regulation of transcription from RNA polymerase II promoter, metabolic process, Ether_lipid_metabolism Glycerophospholipid_metabolism Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04782.11 | DUF632 | 57 | 78 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016597 | amino acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.