Annotation of co-expression genes

PH01002231G0280's details annotation

1.Annotation

ICBR annotation: peroxidase precursor, putative, expressed

Blast result AT4G25980 : 4.40E-95
Blast annotation: Peroxidase superfamily protein

2.Location

Scaffold: PH01002231
Strand: +

RegionStartEnd
gene190858196241
mRNA190858196241
exon190858191440
exon191600191785
exon191903192065
exon192148192554
exon192700192817
exon193976194185
exon194698194766
exon195381196241
CDS191228191440
CDS191600191785
CDS191903192065
CDS192148192554
CDS192700192817
CDS193976194185
CDS194698194766
CDS195381195562

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00141.22peroxidase43286

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phenylalanine metabolismperoxidase [EC:1.11.1.7]ko00360K00430
Phenylpropanoid biosynthesisperoxidase [EC:1.11.1.7]ko00940K00430
Methane metabolismperoxidase [EC:1.11.1.7]ko00680K00430

10.Gene Ontology

GO AccessionGO Annotation
GO:0004601peroxidase activity
GO:0006979response to oxidative stress
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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