PH01002239G0180's details annotation
1.Annotation
ICBR annotation: metallothionein, putative, expressed
Blast result AT5G02380 : 7.10E-08
Blast annotation: metallothionein 2B
2.Location
Scaffold: PH01002239
Strand: -
| Region | Start | End |
| gene | 159240 | 162278 |
| mRNA | 159240 | 162278 |
| exon | 159240 | 160322 |
| exon | 161695 | 162278 |
| CDS | 160157 | 160322 |
| CDS | 161695 | 161861 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000415 | SOS_response DNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01439.17 | Metallothio_2 | 56 | 110 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.