PH01002245G0110's details annotation
1.Annotation
ICBR annotation: thioredoxin, putative, expressed
Blast result AT1G11530 : 4.40E-29
Blast annotation: C-terminal cysteine residue is changed to a serine 1
2.Location
Scaffold: PH01002245
Strand: +
| Region | Start | End |
| gene | 71539 | 73470 |
| mRNA | 71539 | 73470 |
| exon | 71539 | 71811 |
| exon | 72265 | 72387 |
| exon | 72770 | 73470 |
| CDS | 71704 | 71811 |
| CDS | 72265 | 72387 |
| CDS | 72770 | 72946 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001201 | glycerol ether metabolic process, Spliceosome cell redox homeostasis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00085.19 | Thioredoxin | 16 | 116 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006662 | glycerol ether metabolic process |
| GO:0009055 | electron carrier activity |
| GO:0015035 | protein disulfide oxidoreductase activity |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.