Annotation of co-expression genes

PH01002248G0250's details annotation

1.Annotation

ICBR annotation: pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed

Blast result AT4G15530 : 0.00E+00
Blast annotation: pyruvate orthophosphate dikinase

2.Location

Scaffold: PH01002248
Strand: -

RegionStartEnd
gene137709150177
mRNA137709150177
exon137709138008
exon138648138725
exon138845138911
exon140598140759
exon141129141220
exon141304141381
exon141557141694
exon141959142087
exon142416142521
exon142697142874
exon143284143422
exon143592143681
exon143859144020
exon144177144341
exon144603144740
exon145355145534
exon145792145860
exon145906146034
exon146236146471
exon146561146723
exon149418149555
exon149699149932
exon150044150177
CDS137781138008
CDS138648138725
CDS138845138911
CDS140598140759
CDS141129141220
CDS141304141381
CDS141557141694
CDS141959142087
CDS142416142521
CDS142697142874
CDS143284143422
CDS143592143681
CDS143859144020
CDS144177144341
CDS144603144740
CDS145355145534
CDS145792145860
CDS145906146034
CDS146236146471
CDS146561146723
CDS149418149555
CDS149699149932
CDS150044150130

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01326.18PPDK_N2864
PF01326.18PPDK_N77388
PF00391.22PEP-utilizers454535
PF02896.17PEP-utilizers_C549883

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Pyruvate metabolismpyruvate,orthophosphate dikinase [EC:2.7.9.1]ko00620K01006
Carbon fixation in photosynthetic organismspyruvate,orthophosphate dikinase [EC:2.7.9.1]ko00710K01006

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0006090pyruvate metabolic process
GO:0016301kinase activity
GO:0016310phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0050242pyruvate, phosphate dikinase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.