PH01002256G0210's details annotation
1.Annotation
ICBR annotation: peroxidase precursor, putative, expressed
Blast result AT5G05340 : 1.20E-65
Blast annotation: Peroxidase superfamily protein
2.Location
Scaffold: PH01002256
Strand: -
| Region | Start | End |
| gene | 99292 | 101864 |
| mRNA | 99292 | 101864 |
| exon | 99292 | 101385 |
| exon | 101519 | 101864 |
| CDS | 100621 | 101385 |
| CDS | 101519 | 101770 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000485 | Ascorbate_and_aldarate_metabolism Amino_sugar_and_nucleotide_sugar_metabolism cellular metabolic process, coenzyme binding, ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00141.22 | peroxidase | 57 | 302 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.