PH01002268G0030's details annotation
1.Annotation
ICBR annotation: aconitate hydratase protein, putative, expressed
Blast result AT2G05710 : 0.00E+00
Blast annotation: aconitase 3
2.Location
Scaffold: PH01002268
Strand: +
| Region | Start | End |
| gene | 34300 | 42106 |
| mRNA | 34300 | 42106 |
| exon | 34300 | 34555 |
| exon | 36007 | 36111 |
| exon | 36763 | 36923 |
| exon | 36999 | 37091 |
| exon | 37289 | 37474 |
| exon | 37581 | 37742 |
| exon | 38082 | 38226 |
| exon | 38333 | 38338 |
| exon | 38394 | 38536 |
| exon | 39090 | 39146 |
| exon | 39226 | 39305 |
| exon | 39401 | 39476 |
| exon | 39563 | 39748 |
| exon | 39837 | 39904 |
| exon | 39999 | 40117 |
| exon | 40197 | 40318 |
| exon | 40456 | 40554 |
| exon | 40800 | 41279 |
| exon | 41381 | 41479 |
| exon | 41563 | 41805 |
| exon | 41923 | 42106 |
| CDS | 34543 | 34555 |
| CDS | 36007 | 36111 |
| CDS | 36763 | 36923 |
| CDS | 36999 | 37091 |
| CDS | 37289 | 37474 |
| CDS | 37581 | 37742 |
| CDS | 38082 | 38226 |
| CDS | 38333 | 38338 |
| CDS | 38394 | 38536 |
| CDS | 39090 | 39146 |
| CDS | 39226 | 39305 |
| CDS | 39401 | 39476 |
| CDS | 39563 | 39748 |
| CDS | 39837 | 39904 |
| CDS | 39999 | 40117 |
| CDS | 40197 | 40318 |
| CDS | 40456 | 40554 |
| CDS | 40800 | 41279 |
| CDS | 41381 | 41479 |
| CDS | 41563 | 41805 |
| CDS | 41923 | 41997 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00330.19 | Aconitase | 68 | 573 |
| PF00694.18 | Aconitase_C | 702 | 830 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Citrate cycle (TCA cycle) | aconitate hydratase 1 / homoaconitase [EC:4.2.1.3;EC:4.2.1.-] | ko00020 | K01681 |
| Glyoxylate and dicarboxylate metabolism | aconitate hydratase 1 / homoaconitase [EC:4.2.1.3;EC:4.2.1.-] | ko00630 | K01681 |
| Carbon fixation pathways in prokaryotes | aconitate hydratase 1 / homoaconitase [EC:4.2.1.3;EC:4.2.1.-] | ko00720 | K01681 |
| Lysine biosynthesis | aconitate hydratase 1 / homoaconitase [EC:4.2.1.3;EC:4.2.1.-] | ko00300 | K01681 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0051539 | 4 iron, 4 sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.