PH01002268G0180's details annotation
1.Annotation
ICBR annotation: NB-ARC domain containing protein, expressed
Blast result AT1G58410 : 1.50E-33
Blast annotation: Disease resistance protein (CC-NBS-LRR class) family
2.Location
Scaffold: PH01002268
Strand: -
| Region | Start | End |
| gene | 136642 | 139830 |
| mRNA | 136642 | 139830 |
| exon | 136642 | 139830 |
| CDS | 136769 | 139039 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000523 | PLATZ Transcription_Regulator(from iTAK) Trihelix Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 2 | 163 |
| PF00931.21 | NB-ARC | 238 | 292 |
| PF13855.5 | LRR_8 | 450 | 499 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.