PH01002269G0120's details annotation
1.Annotation
ICBR annotation: male sterility protein, putative, expressed
Blast result AT5G22500 : 5.80E-97
Blast annotation: fatty acid reductase 1
2.Location
Scaffold: PH01002269
Strand: +
| Region | Start | End |
| gene | 124568 | 130980 |
| mRNA | 124568 | 130980 |
| exon | 124568 | 125747 |
| exon | 126021 | 126124 |
| exon | 126207 | 126409 |
| exon | 126504 | 126604 |
| exon | 126695 | 126841 |
| exon | 127211 | 127415 |
| exon | 129254 | 129415 |
| exon | 129527 | 129608 |
| exon | 130432 | 130698 |
| exon | 130816 | 130980 |
| CDS | 125666 | 125747 |
| CDS | 126021 | 126124 |
| CDS | 126207 | 126409 |
| CDS | 126504 | 126604 |
| CDS | 126695 | 126841 |
| CDS | 127211 | 127415 |
| CDS | 129254 | 129415 |
| CDS | 129527 | 129608 |
| CDS | 130432 | 130698 |
| CDS | 130816 | 130947 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000751 | Cutin,_suberine_and_wax_biosynthesis Peroxisome fatty-acyl-CoA_reductase_(alcohol-forming)_activity MYB Transcription_Regulator(from PlantTFDB) lipid biosynthetic process, metabolic process, fatty acid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07993.11 | NAD_binding_4 | 18 | 372 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 84 Cutin, suberine and wax biosynthesis | fatty acyl-CoA reductase [EC:1.2.1.-] | K13356 | |
| Peroxisome | fatty acyl-CoA reductase [EC:1.2.1.-] | ko04146 | K13356 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.