PH01002269G0230's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G03070 : 3.30E-24
Blast annotation: mediator subunit 8
2.Location
Scaffold: PH01002269
Strand: -
| Region | Start | End |
| gene | 207873 | 213471 |
| mRNA | 207873 | 213471 |
| exon | 207873 | 208082 |
| exon | 208473 | 208540 |
| exon | 208972 | 209155 |
| exon | 210286 | 210334 |
| exon | 210458 | 210582 |
| exon | 212268 | 212342 |
| exon | 212423 | 213471 |
| CDS | 207897 | 208082 |
| CDS | 208473 | 208540 |
| CDS | 208972 | 209155 |
| CDS | 210286 | 210334 |
| CDS | 210458 | 210582 |
| CDS | 212268 | 212342 |
| CDS | 212423 | 212479 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01287.19 | eIF-5a | 3 | 44 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003746 | translation elongation factor activity |
| GO:0006452 | translational frameshifting |
| GO:0008612 | peptidyl-lysine modification to hypusine |
| GO:0043022 | ribosome binding |
| GO:0045901 | positive regulation of translational elongation |
| GO:0045905 | positive regulation of translational termination |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.