PH01002270G0240's details annotation
1.Annotation
ICBR annotation: chromo domain containing protein, expressed
Blast result AT1G08060 : 1.30E-88
Blast annotation: ATP-dependent helicase family protein
2.Location
Scaffold: PH01002270
Strand: -
| Region | Start | End |
| gene | 180559 | 191111 |
| mRNA | 180559 | 191111 |
| exon | 180559 | 182026 |
| exon | 182440 | 182635 |
| exon | 182739 | 183347 |
| exon | 184038 | 185195 |
| exon | 185276 | 185380 |
| exon | 186269 | 186357 |
| exon | 186438 | 187419 |
| exon | 188046 | 188219 |
| exon | 188367 | 188684 |
| exon | 189066 | 189317 |
| exon | 189606 | 189746 |
| exon | 190850 | 191111 |
| CDS | 180978 | 182026 |
| CDS | 182440 | 182635 |
| CDS | 182739 | 183347 |
| CDS | 184038 | 185195 |
| CDS | 185276 | 185380 |
| CDS | 186269 | 186357 |
| CDS | 186438 | 187419 |
| CDS | 188046 | 188219 |
| CDS | 188367 | 188684 |
| CDS | 189066 | 189317 |
| CDS | 189606 | 189746 |
| CDS | 190850 | 190924 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000116 | nuclear chromosome, riboflavin synthase complex, riboflavin biosynthetic process, phosphoglycerate kinase activity, glycolysis, Riboflavin_metabolism |
| coexpression network | CFinderM000117 | nuclear chromosome, Glycolysis_/_Gluconeogenesis Ino80_complex ATP citrate synthase activity, phosphoglycerate kinase activity, succinate-CoA ligase (ADP-forming) activity, |
| coexpression network | CFinderM000842 | Carbon_fixation_in_photosynthetic_organisms nuclear chromosome, Ino80_complex ribulose-phosphate 3-epimerase activity, helicase activity, phosphoglycerate kinase activity, SNF2 Transcription_Regulator(from iTAK) racemase and epimerase activity, acting on carbohydrates and derivatives, Pentose_phosphate_pathway Pentose_and_glucuronate_interconversions pentose-phosphate shunt, |
| coexpression network | CFinderM000843 | ribulose-phosphate 3-epimerase activity, helicase activity, SNF2 Transcription_Regulator(from iTAK) racemase and epimerase activity, acting on carbohydrates and derivatives, pentose-phosphate shunt, Carbon_fixation_in_photosynthetic_organisms Pentose_and_glucuronate_interconversions Pentose_phosphate_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.