PH01002276G0150's details annotation
1.Annotation
ICBR annotation: plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed
Blast result AT1G68590 : 4.20E-35
Blast annotation: Ribosomal protein PSRP-3/Ycf65
2.Location
Scaffold: PH01002276
Strand: -
| Region | Start | End |
| gene | 102266 | 106050 |
| mRNA | 102266 | 106050 |
| exon | 102266 | 103037 |
| exon | 104780 | 104912 |
| exon | 105444 | 106050 |
| CDS | 102756 | 103037 |
| CDS | 104780 | 104912 |
| CDS | 105444 | 105478 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04839.12 | PSRP-3_Ycf65 | 127 | 173 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.