Annotation of co-expression genes

PH01002278G0120's details annotation

1.Annotation

ICBR annotation: OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed

Blast result AT5G02820 : 6.00E-162
Blast annotation: Spo11/DNA topoisomerase VI, subunit A protein

2.Location

Scaffold: PH01002278
Strand: -

RegionStartEnd
gene8548193236
mRNA8548193236
exon8548188249
exon8894189001
exon8909589186
exon8927089349
exon9005090086
exon9061190670
exon9109591140
exon9122491807
exon9222793236
CDS8675388249
CDS8894189001
CDS8909589186
CDS8927089349
CDS9005090086
CDS9061190670
CDS9109591140
CDS9122491807
CDS9222792358

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000354chromosome,
DNA metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13911.5AhpC-TSA_2251364
PF04406.13TP6A_N580641

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0005694chromosome
GO:0006259DNA metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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