PH01002278G0360's details annotation
1.Annotation
ICBR annotation: TBC domain containing protein, expressed
Blast result AT2G37290 : 3.00E-167
Blast annotation: Ypt/Rab-GAP domain of gyp1p superfamily protein
2.Location
Scaffold: PH01002278
Strand: -
| Region | Start | End |
| gene | 230564 | 241414 |
| mRNA | 230564 | 241414 |
| exon | 230564 | 231467 |
| exon | 231703 | 231811 |
| exon | 232135 | 232265 |
| exon | 232383 | 232484 |
| exon | 233928 | 234017 |
| exon | 236030 | 236099 |
| exon | 236700 | 236761 |
| exon | 237070 | 237494 |
| exon | 237628 | 237711 |
| exon | 238274 | 238337 |
| exon | 238412 | 238478 |
| exon | 238610 | 238668 |
| exon | 239095 | 239208 |
| exon | 239303 | 239482 |
| exon | 239581 | 240468 |
| exon | 240549 | 240618 |
| exon | 241205 | 241414 |
| CDS | 231432 | 231467 |
| CDS | 231703 | 231811 |
| CDS | 232135 | 232265 |
| CDS | 232383 | 232484 |
| CDS | 233928 | 234017 |
| CDS | 236030 | 236099 |
| CDS | 236700 | 236761 |
| CDS | 237070 | 237494 |
| CDS | 237628 | 237711 |
| CDS | 238274 | 238337 |
| CDS | 238412 | 238478 |
| CDS | 238610 | 238668 |
| CDS | 239095 | 239208 |
| CDS | 239303 | 239482 |
| CDS | 239581 | 240468 |
| CDS | 240549 | 240618 |
| CDS | 241205 | 241239 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00566.17 | RabGAP-TBC | 327 | 492 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005097 | Rab GTPase activator activity |
| GO:0005622 | intracellular |
| GO:0032313 | regulation of Rab GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.