PH01002279G0010's details annotation
1.Annotation
ICBR annotation: TENA/THI-4 family protein, putative, expressed
Blast result AT5G32470 : 9.00E-171
Blast annotation: Haem oxygenase-like, multi-helical
2.Location
Scaffold: PH01002279
Strand: +
| Region | Start | End |
| gene | 17119 | 23737 |
| mRNA | 17119 | 23737 |
| exon | 17119 | 20299 |
| exon | 20390 | 20498 |
| exon | 21146 | 21433 |
| exon | 21557 | 21968 |
| exon | 22090 | 22359 |
| exon | 23023 | 23737 |
| CDS | 19458 | 20299 |
| CDS | 20390 | 20498 |
| CDS | 21146 | 21433 |
| CDS | 21557 | 21968 |
| CDS | 22090 | 22359 |
| CDS | 23023 | 23453 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000650 | proteasome complex, Golgi_transport_complex regulation of protein catabolic process, cell death, binding, enzyme regulator activity, RNA metabolic process, |
| coexpression network | CFinderM001258 | proteasome complex, regulation of protein catabolic process, enzyme regulator activity, Proteasome RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03070.15 | TENA_THI-4 | 249 | 346 |
| PF03070.15 | TENA_THI-4 | 365 | 456 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.