PH01002283G0050's details annotation
1.Annotation
ICBR annotation: ATP synthase F1, delta subunit family protein, putative, expressed
Blast result AT4G09650 : 1.30E-47
Blast annotation: ATP synthase delta-subunit gene
2.Location
Scaffold: PH01002283
Strand: -
| Region | Start | End |
| gene | 9241 | 10780 |
| mRNA | 9241 | 10780 |
| exon | 9241 | 10047 |
| exon | 10598 | 10780 |
| CDS | 9380 | 10047 |
| CDS | 10598 | 10628 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000294 | RLK-Pelle_LRR-Xa (from iTAK) photosystem I reaction center, photosystem I, ATP synthesis coupled proton transport, Photosynthesis hydrogen ion transporting ATP synthase activity, rotational mechanism, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00213.17 | OSCP | 50 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015986 | ATP synthesis coupled proton transport |
| GO:0016020 | membrane |
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.