PH01002283G0270's details annotation
1.Annotation
ICBR annotation: SEC6, putative, expressed
Blast result AT1G71820 : 0.00E+00
Blast annotation: SEC6
2.Location
Scaffold: PH01002283
Strand: +
| Region | Start | End |
| gene | 156264 | 166262 |
| mRNA | 156264 | 166262 |
| exon | 156264 | 156729 |
| exon | 156774 | 156863 |
| exon | 157346 | 157401 |
| exon | 157815 | 157923 |
| exon | 158064 | 158204 |
| exon | 158284 | 158463 |
| exon | 158595 | 158678 |
| exon | 158765 | 158851 |
| exon | 160498 | 160542 |
| exon | 161274 | 161352 |
| exon | 162481 | 162550 |
| exon | 163022 | 163109 |
| exon | 163426 | 163515 |
| exon | 164483 | 164599 |
| exon | 164750 | 164812 |
| exon | 165017 | 166262 |
| CDS | 156622 | 156729 |
| CDS | 156774 | 156863 |
| CDS | 157346 | 157401 |
| CDS | 157815 | 157923 |
| CDS | 158064 | 158204 |
| CDS | 158284 | 158463 |
| CDS | 158595 | 158678 |
| CDS | 158765 | 158851 |
| CDS | 160498 | 160542 |
| CDS | 161274 | 161352 |
| CDS | 162481 | 162550 |
| CDS | 163022 | 163109 |
| CDS | 163426 | 163515 |
| CDS | 164483 | 164599 |
| CDS | 164750 | 164812 |
| CDS | 165017 | 165148 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001615 | Alanine,_aspartate_and_glutamate_metabolism Nitrogen_metabolism 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, exocyst, (1->3)-beta-D-glucan biosynthetic process, exocytosis, cellular amino acid metabolic process, Arginine_and_proline_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06046.12 | Sec6 | 8 | 494 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000145 | exocyst |
| GO:0006887 | exocytosis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.