PH01002295G0170's details annotation
1.Annotation
ICBR annotation: FAD dependent oxidoreductase domain containing protein, expressed
Blast result AT5G54770 : 2.00E-142
Blast annotation: thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)
2.Location
Scaffold: PH01002295
Strand: +
| Region | Start | End |
| gene | 108325 | 112331 |
| mRNA | 108325 | 112331 |
| exon | 108325 | 112014 |
| exon | 112105 | 112331 |
| CDS | 111142 | 112014 |
| CDS | 112105 | 112278 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01946.16 | Thi4 | 65 | 298 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006950 | response to stress |
| GO:0009228 | thiamine biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.