Annotation of co-expression genes

PH01002303G0300's details annotation

1.Annotation

ICBR annotation: reticulon domain containing protein, putative, expressed

Blast result AT5G58000 : 2.40E-45
Blast annotation: Reticulon family protein

2.Location

Scaffold: PH01002303
Strand: +

RegionStartEnd
gene201684206165
mRNA201684206165
exon201684201932
exon202566202598
exon202677202751
exon202982203050
exon203165203227
exon203311203397
exon203502203604
exon203715203789
exon203868204027
exon204158204227
exon204534204599
exon205270205322
exon205681206165
CDS201827201932
CDS202566202598
CDS202677202751
CDS202982203050
CDS203165203227
CDS203311203397
CDS203502203604
CDS203715203789
CDS203868204027
CDS204158204227
CDS204534204599
CDS205270205322
CDS205681205731

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001550mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
oxidoreductase activity,
hydrogen ion transmembrane transporter activity,
ATP synthesis coupled proton transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02453.16Reticulon145305

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005783endoplasmic reticulum

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.