PH01002311G0040's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G50370 : 2.00E-172
Blast annotation: -
2.Location
Scaffold: PH01002311
Strand: -
| Region | Start | End |
| gene | 27984 | 38343 |
| mRNA | 27984 | 38343 |
| exon | 27984 | 28887 |
| exon | 29438 | 30564 |
| exon | 30645 | 30828 |
| exon | 31806 | 31995 |
| exon | 32035 | 32270 |
| exon | 32366 | 34610 |
| exon | 34739 | 38343 |
| CDS | 28189 | 28887 |
| CDS | 29438 | 30564 |
| CDS | 30645 | 30828 |
| CDS | 31806 | 31995 |
| CDS | 32035 | 32270 |
| CDS | 32366 | 34610 |
| CDS | 34739 | 36825 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001637 | protein binding, small GTPase mediated signal transduction, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.