Gene details

Annotation of co-expression genes

PH01002314G0120's details annotation

1.Annotation

ICBR annotation: polynucleotide phosphorylase, putative, expressed

Blast result AT3G03710 : 3.00E-115
Blast annotation: polyribonucleotide nucleotidyltransferase, putative

2.Location

Scaffold: PH01002314
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000626	mRNA_catabolic_process polyribonucleotide_nucleotidyltransferase_activity CMGC_MAPK (from iTAK) 3'-5'-exoribonuclease activity, RNA binding, RNA processing, Purine_metabolism RNA_degradation Pyrimidine_metabolism
coexpression network	CFinderM000901	mRNA_catabolic_process polyribonucleotide_nucleotidyltransferase_activity RNA binding, 3'-5'-exoribonuclease activity, CE8 Carbohydrate_Esterases cell wall, cell wall modification, pectinesterase activity, RNA processing,
coexpression network	CFinderM001306	mRNA_catabolic_process polyribonucleotide_nucleotidyltransferase_activity CE8 Carbohydrate_Esterases RNA binding, conversion_of_methionyl-tRNA_to_N-formyl-methionyl-tRNA methionyl-tRNA formyltransferase activity, 3'-5'-exoribonuclease activity, hydroxymethyl-, formyl- and related transferase activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Purine metabolism	polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]	ko00230	K00962
Pyrimidine metabolism	polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]	ko00240	K00962
RNA degradation	polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]	ko03018	K00962

10.Gene Ontology

GO Accession	GO Annotation
GO:0000175	3'-5'-exoribonuclease activity
GO:0003723	RNA binding
GO:0004654	polyribonucleotide nucleotidyltransferase activity
GO:0006396	RNA processing
GO:0006402	mRNA catabolic process

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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