PH01002317G0170's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT1G63800 : 4.60E-70
Blast annotation: ubiquitin-conjugating enzyme 5
2.Location
Scaffold: PH01002317
Strand: -
| Region | Start | End |
| gene | 107116 | 109987 |
| mRNA | 107116 | 109987 |
| exon | 107116 | 107601 |
| exon | 107768 | 107896 |
| exon | 107994 | 108046 |
| exon | 108123 | 108237 |
| exon | 109650 | 109753 |
| exon | 109899 | 109987 |
| CDS | 107468 | 107601 |
| CDS | 107768 | 107896 |
| CDS | 107994 | 108046 |
| CDS | 108123 | 108237 |
| CDS | 109650 | 109753 |
| CDS | 109899 | 109942 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000619 | TKL-Pl-4 (from iTAK) Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM000850 | RLK-Pelle_DLSV (from iTAK) |
| coexpression network | CFinderM001237 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 3 | 127 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 H [EC:6.3.2.19] | ko04120 | K10576 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.