PH01002329G0320's details annotation
1.Annotation
ICBR annotation: vacuolar ATP synthase subunit d, putative, expressed
Blast result AT3G28715 : 0.00E+00
Blast annotation: ATPase, V0/A0 complex, subunit C/D
2.Location
Scaffold: PH01002329
Strand: +
| Region | Start | End |
| gene | 210625 | 215715 |
| mRNA | 210625 | 215715 |
| exon | 210625 | 211283 |
| exon | 212352 | 212472 |
| exon | 212590 | 212697 |
| exon | 212781 | 212883 |
| exon | 212989 | 213069 |
| exon | 213199 | 213284 |
| exon | 213411 | 213470 |
| exon | 213560 | 213608 |
| exon | 214681 | 214815 |
| exon | 215149 | 215715 |
| CDS | 211103 | 211283 |
| CDS | 212352 | 212472 |
| CDS | 212590 | 212697 |
| CDS | 212781 | 212883 |
| CDS | 212989 | 213069 |
| CDS | 213199 | 213284 |
| CDS | 213411 | 213470 |
| CDS | 213560 | 213608 |
| CDS | 214681 | 214815 |
| CDS | 215149 | 215280 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001754 | Endocytosis proton-transporting V-type ATPase, V0 domain, cysteine-type endopeptidase activity, hydrogen ion transmembrane transporter activity, ATP hydrolysis coupled proton transport, Oxidative_phosphorylation Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01992.15 | vATP-synt_AC39 | 16 | 344 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | V-type H+-transporting ATPase subunit AC39 [EC:3.6.3.-] | ko00190 | K02146 |
| Phagosome | V-type H+-transporting ATPase subunit AC39 [EC:3.6.3.-] | ko04145 | K02146 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015078 | hydrogen ion transmembrane transporter activity |
| GO:0015991 | ATP hydrolysis coupled proton transport |
| GO:0033179 | proton-transporting V-type ATPase, V0 domain |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.