PH01002332G0210's details annotation
1.Annotation
ICBR annotation: OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT1G28110 : 0.00E+00
Blast annotation: serine carboxypeptidase-like 45
2.Location
Scaffold: PH01002332
Strand: -
| Region | Start | End |
| gene | 173377 | 178976 |
| mRNA | 173377 | 178976 |
| exon | 173377 | 175432 |
| exon | 175519 | 175636 |
| exon | 175898 | 175990 |
| exon | 176092 | 176219 |
| exon | 176310 | 176591 |
| exon | 176677 | 176756 |
| exon | 176876 | 176968 |
| exon | 177301 | 177396 |
| exon | 177532 | 177633 |
| exon | 178002 | 178976 |
| CDS | 175280 | 175432 |
| CDS | 175519 | 175636 |
| CDS | 175898 | 175990 |
| CDS | 176092 | 176219 |
| CDS | 176310 | 176591 |
| CDS | 176677 | 176756 |
| CDS | 176876 | 176968 |
| CDS | 177301 | 177396 |
| CDS | 177532 | 177633 |
| CDS | 178002 | 178266 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000322 | Endocytosis protein refolding, vesicle docking involved in exocytosis, nucleus, |
| coexpression network | CFinderM000440 | Endocytosis cell wall, apoplast, xyloglucan:xyloglucosyl transferase activity, cellular glucan metabolic process, vesicle docking involved in exocytosis, serine-type carboxypeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 43 | 461 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.