PH01002334G0020's details annotation
1.Annotation
ICBR annotation: ligatin, putative, expressed
Blast result AT1G71350 : 0.00E+00
Blast annotation: eukaryotic translation initiation factor SUI1 family protein
2.Location
Scaffold: PH01002334
Strand: -
| Region | Start | End |
| gene | 8757 | 19970 |
| mRNA | 8757 | 19970 |
| exon | 8757 | 9483 |
| exon | 9572 | 9942 |
| exon | 10089 | 10360 |
| exon | 10808 | 10916 |
| exon | 11133 | 11710 |
| exon | 11826 | 12016 |
| exon | 15167 | 15278 |
| exon | 18200 | 18498 |
| exon | 19294 | 19970 |
| CDS | 9359 | 9483 |
| CDS | 9572 | 9942 |
| CDS | 10089 | 10360 |
| CDS | 10808 | 10916 |
| CDS | 11133 | 11710 |
| CDS | 11826 | 12016 |
| CDS | 15167 | 15278 |
| CDS | 18200 | 18498 |
| CDS | 19294 | 19315 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01253.21 | SUI1 | 602 | 680 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003743 | translation initiation factor activity |
| GO:0005515 | protein binding |
| GO:0006413 | translational initiation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.