PH01002341G0180's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G22320 : 3.10E-19
Blast annotation: -
2.Location
Scaffold: PH01002341
Strand: +
| Region | Start | End |
| gene | 112649 | 117010 |
| mRNA | 112649 | 117010 |
| exon | 112649 | 113318 |
| exon | 114292 | 114478 |
| exon | 116208 | 117010 |
| CDS | 113074 | 113318 |
| CDS | 114292 | 114478 |
| CDS | 116208 | 116399 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001488 | STAT Transcription_Regulator(from PlantTFDB) TKL-Pl-5 (from iTAK) Lysine_degradation nucleus, chloroplast, SET Transcription_Regulator(from iTAK) histone_methylation mRNA processing, histone_lysine_methylation |
| coexpression network | CFinderM001521 | Lipoic_acid_metabolism NAK (from iTAK) AP2/ERF-AP2 Transcription_Regulator(from iTAK) chloroplast, AP2 Transcription_Regulator(from PlantTFDB) lipoate biosynthetic process, RNA-directed RNA polymerase activity, lipoate synthase activity, |
| coexpression network | CFinderM001705 | Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation chloroplast, histone-lysine N-methyltransferase activity, histone_binding ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.