PH01002343G0150's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT1G10580 : 0.00E+00
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01002343
Strand: -
| Region | Start | End |
| gene | 87597 | 91344 |
| mRNA | 87597 | 91344 |
| exon | 87597 | 91344 |
| CDS | 89241 | 90956 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000713 | signal peptide processing, tRNA modification, tRNA_guanylyltransferase_activity F-actin capping protein complex, actin cytoskeleton organization, WASH_complex |
| coexpression network | CFinderM001048 | F-actin capping protein complex, WASH_complex actin cytoskeleton organization, actin binding, CK1_CK1 (from iTAK) macromolecule biosynthetic process, cytoplasm, holo-[acyl-carrier-protein] synthase activity, Pantothenate_and_CoA_biosynthesis |
| coexpression network | CFinderM001049 | microtubule associated complex, microtubule-based movement, microtubule motor activity, PcG_protein_complex F-actin capping protein complex, Sesquiterpenoid_and_triterpenoid_biosynthesis spindle pole, WASH_complex microtubule organizing center, DNA polymerase III complex, RLK-Pelle_RLCK-V (from iTAK) CK1_CK1 (from iTAK) Pantothenate_and_CoA_biosynthesis macromolecule biosynthetic process, |
| coexpression network | CFinderM001220 | vesicle docking involved in exocytosis, Peroxisome Fatty_acid_metabolism |
| coexpression network | CFinderM001365 | HSF Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) GT47 GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 272 | 310 |
| PF00400.31 | WD40 | 317 | 353 |
| PF00400.31 | WD40 | 401 | 438 |
| PF00400.31 | WD40 | 494 | 529 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | pre-mRNA-processing factor 17 | ko03041 | K12816 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.