Annotation of co-expression genes

PH01002344G0400's details annotation

1.Annotation

ICBR annotation: MYB family transcription factor, putative

Blast result AT4G01060 : 4.70E-16
Blast annotation: CAPRICE-like MYB3

2.Location

Scaffold: PH01002344
Strand: -

RegionStartEnd
gene227171230076
mRNA227171230076
exon227171227278
exon228029228116
exon229277229364
exon229913230076
CDS227194227278
CDS228029228116
CDS229277229364
CDS229913229930

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000661nucleosome assembly,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
nucleosome,
coexpression networkCFinderM000980MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding4786

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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