PH01002347G0200's details annotation
1.Annotation
ICBR annotation: 12-oxophytodienoate reductase, putative, expressed
Blast result AT2G06050 : 1.00E-163
Blast annotation: oxophytodienoate-reductase 3
2.Location
Scaffold: PH01002347
Strand: -
| Region | Start | End |
| gene | 162247 | 165418 |
| mRNA | 162247 | 165418 |
| exon | 162247 | 162941 |
| exon | 163053 | 163235 |
| exon | 163964 | 164094 |
| exon | 165016 | 165156 |
| exon | 165279 | 165418 |
| CDS | 162301 | 162941 |
| CDS | 163053 | 163235 |
| CDS | 163964 | 164094 |
| CDS | 165016 | 165156 |
| CDS | 165279 | 165340 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00724.19 | Oxidored_FMN | 6 | 352 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| alpha-Linolenic acid metabolism | 12-oxophytodienoic acid reductase [EC:1.3.1.42] | ko00592 | K05894 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0010181 | FMN binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.