Annotation of co-expression genes

PH01002350G0210's details annotation

1.Annotation

ICBR annotation: beta-amylase, putative, expressed

Blast result AT4G00490 : 3.00E-150
Blast annotation: beta-amylase 2

2.Location

Scaffold: PH01002350
Strand: -

RegionStartEnd
gene153957161816
mRNA153957161816
exon153957155245
exon156518156737
exon156991157200
exon157383157457
exon157823157987
exon158977159171
exon159409159612
exon159815159892
exon160890161816
CDS154980155245
CDS156518156737
CDS156991157200
CDS157383157457
CDS157823157987
CDS158977159171
CDS159409159612
CDS159815159892
CDS160890161312

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001477BES1 Transcription_Regulator(from PlantTFDB)
Trihelix Transcription_Regulator(from PlantTFDB)
beta-amylase activity,
binding,
cellular amino acid biosynthetic process,
polysaccharide catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)BES1
Transcription_Regulator(from PlantTFDB)BES1

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05687.12BES1_N60137
PF01373.16Glyco_hydro_14163356

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000272polysaccharide catabolic process
GO:0003824catalytic activity
GO:0005975carbohydrate metabolic process
GO:0016161beta-amylase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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