Annotation of co-expression genes

PH01002353G0300's details annotation

1.Annotation

ICBR annotation: zinc finger, putative, expressed

Blast result AT4G19670 : 5.00E-103
Blast annotation: RING/U-box superfamily protein

2.Location

Scaffold: PH01002353
Strand: -

RegionStartEnd
gene193204199557
mRNA193204199557
exon193204193750
exon195010195292
exon195401195758
exon196715197006
exon197201197460
exon197761199557
CDS193366193750
CDS195010195292
CDS195401195758
CDS196715197006
CDS197201197460
CDS197761197829

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000619TKL-Pl-4 (from iTAK)
Ubiquitin_mediated_proteolysis
coexpression networkCFinderM001327
coexpression networkCFinderM001630GTnc GlycosylTransferases
HSF Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001632translation,
Ribosome
structural constituent of ribosome,
intracellular,
Ribosome
HSF Transcription_Regulator(from PlantTFDB)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
large ribosomal subunit,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01485.20IBR304372
PF01485.20IBR392441

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.