PH01002356G0260's details annotation
1.Annotation
ICBR annotation: enoyl-CoA hydratase/isomerase family protein, putative, expressed
Blast result AT1G60550 : 5.60E-57
Blast annotation: enoyl-CoA hydratase/isomerase D
2.Location
Scaffold: PH01002356
Strand: +
| Region | Start | End |
| gene | 216787 | 221390 |
| mRNA | 216787 | 221390 |
| exon | 216787 | 217724 |
| exon | 218546 | 218593 |
| exon | 220582 | 220677 |
| exon | 220819 | 220941 |
| exon | 221121 | 221390 |
| CDS | 217317 | 217724 |
| CDS | 218546 | 218593 |
| CDS | 220582 | 220677 |
| CDS | 220819 | 220941 |
| CDS | 221121 | 221237 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001533 | RLK-Pelle_LRR-Xa (from iTAK) cytochrome b6f complex, Ubiquinone_and_other_terpenoid-quinone_biosynthesis translation, cation binding, structural constituent of ribosome, alpha-amylase activity, large ribosomal subunit, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00378.19 | ECH_1 | 125 | 257 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquinone and other terpenoid-quinone biosynthesis | naphthoate synthase [EC:4.1.3.36] | ko00130 | K01661 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.