PH01002369G0270's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G01260 : 1.10E-53
Blast annotation: Protein of unknown function (DUF789)
2.Location
Scaffold: PH01002369
Strand: +
| Region | Start | End |
| gene | 199329 | 207973 |
| mRNA | 199329 | 207973 |
| exon | 199329 | 199745 |
| exon | 199847 | 200073 |
| exon | 201896 | 201971 |
| exon | 202172 | 202257 |
| exon | 202344 | 202438 |
| exon | 203856 | 204084 |
| exon | 204312 | 204468 |
| exon | 205202 | 205230 |
| exon | 205787 | 205885 |
| exon | 206112 | 207973 |
| CDS | 199524 | 199745 |
| CDS | 199847 | 200073 |
| CDS | 201896 | 201971 |
| CDS | 202172 | 202257 |
| CDS | 202344 | 202438 |
| CDS | 203856 | 204084 |
| CDS | 204312 | 204468 |
| CDS | 205202 | 205230 |
| CDS | 205787 | 205885 |
| CDS | 206112 | 206214 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000244 | GH37 Glycoside_Hydrolases Starch_and_sucrose_metabolism trehalose metabolic process, catalytic activity, alpha,alpha-trehalase activity, small protein activating enzyme activity, trehalose biosynthetic process, cellular protein modification process, Ubiquitin_mediated_proteolysis metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05623.11 | DUF789 | 55 | 175 |
| PF05623.11 | DUF789 | 175 | 304 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.