PH01002374G0100's details annotation
1.Annotation
ICBR annotation: riboflavin synthase alpha chain, putative, expressed
Blast result AT2G20690 : 5.90E-61
Blast annotation: lumazine-binding family protein
2.Location
Scaffold: PH01002374
Strand: -
| Region | Start | End |
| gene | 85381 | 87019 |
| mRNA | 85381 | 87019 |
| exon | 85381 | 87019 |
| CDS | 85528 | 86400 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00677.16 | Lum_binding | 75 | 167 |
| PF00677.16 | Lum_binding | 182 | 268 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Riboflavin metabolism | riboflavin synthase [EC:2.5.1.9] | ko00740 | K00793 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004746 | riboflavin synthase activity |
| GO:0009231 | riboflavin biosynthetic process |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.