PH01002374G0270's details annotation
1.Annotation
ICBR annotation: vesicle tethering family protein, putative, expressed
Blast result AT3G27530 : 7.00E-136
Blast annotation: golgin candidate 6
2.Location
Scaffold: PH01002374
Strand: +
| Region | Start | End |
| gene | 204543 | 210003 |
| mRNA | 204543 | 210003 |
| exon | 204543 | 205226 |
| exon | 205599 | 206297 |
| exon | 206864 | 206912 |
| exon | 207308 | 207373 |
| exon | 207757 | 208515 |
| exon | 209234 | 210003 |
| CDS | 204817 | 205226 |
| CDS | 205599 | 206297 |
| CDS | 206864 | 206912 |
| CDS | 207308 | 207373 |
| CDS | 207757 | 208515 |
| CDS | 209234 | 209794 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04869.13 | Uso1_p115_head | 361 | 614 |
| PF04871.12 | Uso1_p115_C | 719 | 842 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000139 | Golgi membrane |
| GO:0005737 | cytoplasm |
| GO:0006886 | intracellular protein transport |
| GO:0008565 | protein transporter activity |
| GO:0016020 | membrane |
| GO:0048193 | Golgi vesicle transport |
| GO:0048280 | vesicle fusion with Golgi apparatus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.