PH01002383G0260's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT1G24530 : 3.90E-36
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01002383
Strand: +
| Region | Start | End |
| gene | 169788 | 172066 |
| mRNA | 169788 | 172066 |
| exon | 169788 | 169893 |
| exon | 170885 | 172066 |
| CDS | 169827 | 169893 |
| CDS | 170885 | 171582 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 20 | 52 |
| PF00400.31 | WD40 | 61 | 84 |
| PF00400.31 | WD40 | 107 | 139 |
| PF00400.31 | WD40 | 153 | 184 |
| PF00400.31 | WD40 | 195 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.