Annotation of co-expression genes

PH01002391G0070's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase 5 precursor, putative, expressed

Blast result AT5G25930 : 1.70E-40
Blast annotation: Protein kinase family protein with leucine-rich repeat domain

2.Location

Scaffold: PH01002391
Strand: +

RegionStartEnd
gene4787350526
mRNA4787350526
exon4787348556
exon4866248789
exon4883950526
CDS4828048556
CDS4866248789
CDS4883949123

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000539RLK-Pelle_DLSV (from iTAK)
protein phosphorylation,
C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XI-1 (from iTAK)
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase28124

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.