Annotation of co-expression genes

PH01002392G0160's details annotation

1.Annotation

ICBR annotation: OsPDIL1-1 protein disulfide isomerase PDIL1-1, expressed

Blast result AT1G21750 : 3.00E-161
Blast annotation: PDI-like 1-1

2.Location

Scaffold: PH01002392
Strand: +

RegionStartEnd
gene105447109722
mRNA105447109722
exon105447106057
exon106482106512
exon106612106899
exon107029107217
exon107366107491
exon108132108269
exon108357108476
exon108584108701
exon108912109024
exon109149109722
CDS105849106057
CDS106482106512
CDS106612106899
CDS107029107217
CDS107366107491
CDS108132108269
CDS108357108476
CDS108584108701
CDS108912109024
CDS109149109364

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00085.19Thioredoxin44150
PF13848.5Thioredoxin_6182364
PF00085.19Thioredoxin388490

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumprotein disulfide-isomerase A1 [EC:5.3.4.1]ko04141K09580

10.Gene Ontology

GO AccessionGO Annotation
GO:0005783endoplasmic reticulum
GO:0006662glycerol ether metabolic process
GO:0009055electron carrier activity
GO:0015035protein disulfide oxidoreductase activity
GO:0016853isomerase activity
GO:0045454cell redox homeostasis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.