PH01002400G0040's details annotation
1.Annotation
ICBR annotation: GYF domain containing protein, putative, expressed
Blast result AT5G42950 : 2.10E-86
Blast annotation: GYF domain-containing protein
2.Location
Scaffold: PH01002400
Strand: -
| Region | Start | End |
| gene | 19903 | 29141 |
| mRNA | 19903 | 29141 |
| exon | 19903 | 20778 |
| exon | 20920 | 20979 |
| exon | 21055 | 21215 |
| exon | 22244 | 24018 |
| exon | 24061 | 24926 |
| exon | 25049 | 25699 |
| exon | 26295 | 26360 |
| exon | 26654 | 27587 |
| exon | 27786 | 27838 |
| exon | 28852 | 29141 |
| CDS | 20411 | 20778 |
| CDS | 20920 | 20979 |
| CDS | 21055 | 21215 |
| CDS | 22244 | 24018 |
| CDS | 24061 | 24926 |
| CDS | 25049 | 25699 |
| CDS | 26295 | 26360 |
| CDS | 26654 | 27587 |
| CDS | 27786 | 27838 |
| CDS | 28852 | 28936 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001184 | CAMK_CDPK (from iTAK) |
| coexpression network | CFinderM001322 | ubiquitin ligase complex, protein ubiquitination, DNA_replication protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02213.15 | GYF | 460 | 509 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.