PH01002404G0070's details annotation
1.Annotation
ICBR annotation: terpene synthase, putative
Blast result AT4G16740 : 3.50E-87
Blast annotation: terpene synthase 03
2.Location
Scaffold: PH01002404
Strand: +
| Region | Start | End |
| gene | 45269 | 49624 |
| mRNA | 45269 | 49624 |
| exon | 45269 | 45596 |
| exon | 46099 | 46360 |
| exon | 46919 | 47174 |
| exon | 47824 | 48033 |
| exon | 48155 | 48293 |
| exon | 48380 | 48628 |
| exon | 48730 | 49624 |
| CDS | 45405 | 45596 |
| CDS | 46099 | 46360 |
| CDS | 46919 | 47174 |
| CDS | 47824 | 48033 |
| CDS | 48155 | 48293 |
| CDS | 48380 | 48628 |
| CDS | 48730 | 49032 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01397.20 | Terpene_synth | 69 | 222 |
| PF03936.15 | Terpene_synth_C | 238 | 475 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0008152 | metabolic process |
| GO:0010333 | terpene synthase activity |
| GO:0016829 | lyase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.