Annotation of co-expression genes

PH01002411G0420's details annotation

1.Annotation

ICBR annotation: lectin protein kinase family protein, putative, expressed

Blast result AT4G32300 : 9.00E-150
Blast annotation: S-domain-2 5

2.Location

Scaffold: PH01002411
Strand: +

RegionStartEnd
gene222516223946
mRNA222516223946
exon222516223946
CDS222742223755

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001027RLK-Pelle_SD-2b (from iTAK)
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
Methane_metabolism
coexpression networkCFinderM001154clathrin_coat
RLK-Pelle_LysM (from iTAK)
clathrin_coat_assembly
Trihelix Transcription_Regulator(from PlantTFDB)
cellular amino acid biosynthetic process,
RLK-Pelle_SD-2b (from iTAK)
clathrin_binding
1-phosphatidylinositol_binding
coexpression networkCFinderM001162clathrin_coat_assembly
clathrin_coat
RLK-Pelle_SD-2b (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase16281

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.